User blog comment:HELO/Indoctrination or Not, It's Problematic/@comment-24.132.1.203-20120505220755

There are so many hints and apparent plot holes to ignore or deny. An alternative explanation must address the following arguments:

- What is the meaning of all the nightmares Shepard gets? - Why does nobody notice the boy? (First Anderson at the ventilation shaft, and the soldiers when he is crawling into the transport ship, they all act like only Shepard could see him) - Why would Shepard be immune to indoctrination? (He is been in contact with a lot of Reaper tech during his quests) - Why are there trees from the nightmares around the beam? - Why is the beam right next to the room with the panel that opens the arms? - Why isn't there a big army of Reapers to protect the beam, or shut it down? - Why does the corridor you land in look like the Collectors ship with all those corpses lying around? - How did Anderson enter the beam before Shepard? - Why was Anderson teleported to another location, and how did he managed to get to the console first? - Anderson seemed to talk directly to Shepard when he says "Hear yourself, you have been indoctrinated". - How did Hackett know that Shepard made it to the Citadel while the entire force has been decimated? - Why is Shepard bleeding at the same spot Anderson was shot? - How come the Normandy escaped with the last 2 squadmates?

So many hints and I could name even more that have been found by supporters of the theory.