User blog comment:Traditionalfire/Killing in games/@comment-3450019-20120920034209/@comment-4721065-20120921120235

Where exactly does it say in the game that Udina is indoctrinated? He didn't come into contact with any Reaper tech AFAIK, and we know well enough that merely being in contact with indoctrinated people doesn't make you one. Plus, Udina does a lot for the war effort right up until the coup, something that the Reapers wouldn't want him to do.

About the alien troops, my scenario assumes that lower-rank Cerberus aren't indoctrinated (as otherwise there is hardly any point in siding with Udina), meaning that they would join you if you side with Udina. The very fact that Cerberus was responsible trying to reignite the war between turians and krogan wouldn't sit well with either, and when you factor into equation the attack on Sur'Kesh, etc., there would be a lot of aliens pissed off at them, resulting in considerable reduction of their war assets.

EDIT: Apparently, all of the Cerberus troops are indoctrinated. Ah, well, it was still a interesting idea.