User blog comment:The Milkman/Extended Expectations, Part II/@comment-58.165.188.70-20120628143109/@comment-4237253-20120628160957

It's all good. Remember that you have to load a save from before the assault on Chronos Station (Priority: Cerberus headquarters).

The changes however, don't start until right after you charge the Conduit and Harbinger. The first scene that you'll notice is Shepard taking cover, and whether or not your squadmates are killed. In that scene, Shepard calls Joker to extract his wounded squad. Be sure to bring your LI if you can, because you'll get a touching bit of farewell dialogue with him/her.

Cheers!