User blog comment:Suparockr/List of Plotholes throughout the series/@comment-3228423-20120719212946/@comment-3228423-20120719221711

I did play it, but two things dude. The Council does not know about the events Overlord, and even if the geth did show religious tendencies, they only worshipped machines superior to them, not organics. Archer's probably the exception, but he was a machine at that time.