User blog comment:Awayorafk/Believe. The Indoctrination Theory./@comment-3410066-20120915214024

I think the Indoctrination Theory has as many, if not more, plot holes than the original ending, and isn't even as satisfying. Like one of the arguments you posted about the moral colour swapping, well if the Catalyst and Reapers wanted to reverse the moral colours for Shepard to not pick the Destroy, then wouldn't they have Synthesis be blue, because according to the Indoctrination Theory, that is what they want. Also, in Mass Effect 2, during your decision at the Collector Base, the paragon decision resulted in a red explosion, while the renegade resulted in a blue, does this also mean that Shepard was also Indoctrinated then, or is it just a logical game mechanic? Just a massive flaw I see in that point, I'm an Extended-Cut believer myself, which is a far more satisfying conclusion.