User blog comment:The Milkman/Indoctrination Theorists Say the Darndest Things, Part II/@comment-5830255-20121205100204/@comment-4121017-20121205171739

I'll state the same points I made to the Milkman on his talk page more than a month ago.

1. If Shepard's indoctrinated, then why didn't his/her squadmates or anyone else notice anything odd about him/her? You'd think they would've done anything to prevent or stop the indoctrination from happening.

2. After Shepard wakes up from the "indoctrination," what happens next? What happen to Anderson? The Illusive Man? The Reapers? The Normandy and the crew after Shepard requested an evac for his/her squadmates? Why did it show the mass relays being destroyed/damaged? There are so many questions to the aftermath it's not even funny.

3. You CANNOT get rid of Reaper indoctrination. If I recall correctly, it's an irreversible process. Even if you're strong-willed, like Benezia from ME1, you're SOL. Also, the Thorian and the Leviathans work differently from Reaper indoctrination.

4. You can check out his previous blog post on the IT.

Personally, that assumption sound like it crawled out of the anal of Metal Gear Solid, or at least some bad fanfiction from it.